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Neolithic genomes reveal a distinct ancient HLA allele pool and population transformation in Europe

Alexander Immel, Christoph Rinne, John Meadows, Rodrigo Barquera, András Szolek, Federica Pierini, Julian Susat, Lisa Böhme, Janina Dose, Joanna Bonczarowska, Clara Drummer, Katharina Fuchs, David Ellinghaus, Jan Christian Kässens, Martin Furholt, View ORCID ProfileOliver Kohlbacher, Sabine Schade-Lindig, Iain Mathieson, Andre Franke, Johannes Krause, Johannes Müller, Tobias L. Lenz, Almut Nebel, Ben Krause-Kyora
doi: https://doi.org/10.1101/851188
Alexander Immel
1Institute of Clinical Molecular Biology, Kiel University, Rosalind-Franklin-Straße 12, 24105 Kiel, Germany
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Christoph Rinne
2Institute of Pre- and Protohistoric Archaeology, Kiel University, Johanna-Mestorf-Straße 2-6, 24118 Kiel, Germany
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John Meadows
3Leibniz Laboratory for AMS Dating and Isotope Research, Kiel University, Max-Eyth-Str. 11-13, 24118 Kiel, Germany
4Centre for Baltic and Scandinavian Archaeology (ZBSA), Schloss Gottorf, 24837 Schleswig, Germany
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Rodrigo Barquera
5Max Planck Institute for the Science of Human History, Khalaische Strasse 10, 07745 Jena, Germany
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András Szolek
6Applied Bioinformatics, Dept. for Computer Science, University of Tübingen, Sand 14, 72076 Tübingen, Germany
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Federica Pierini
7Research Group for Evolutionary Immunogenomics, Max Planck Institute for Evolutionary Biology, August-Thienemann-Str. 2, 24306 Plön, Germany
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Julian Susat
1Institute of Clinical Molecular Biology, Kiel University, Rosalind-Franklin-Straße 12, 24105 Kiel, Germany
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Lisa Böhme
1Institute of Clinical Molecular Biology, Kiel University, Rosalind-Franklin-Straße 12, 24105 Kiel, Germany
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Janina Dose
1Institute of Clinical Molecular Biology, Kiel University, Rosalind-Franklin-Straße 12, 24105 Kiel, Germany
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Joanna Bonczarowska
1Institute of Clinical Molecular Biology, Kiel University, Rosalind-Franklin-Straße 12, 24105 Kiel, Germany
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Clara Drummer
2Institute of Pre- and Protohistoric Archaeology, Kiel University, Johanna-Mestorf-Straße 2-6, 24118 Kiel, Germany
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Katharina Fuchs
1Institute of Clinical Molecular Biology, Kiel University, Rosalind-Franklin-Straße 12, 24105 Kiel, Germany
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David Ellinghaus
1Institute of Clinical Molecular Biology, Kiel University, Rosalind-Franklin-Straße 12, 24105 Kiel, Germany
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Jan Christian Kässens
1Institute of Clinical Molecular Biology, Kiel University, Rosalind-Franklin-Straße 12, 24105 Kiel, Germany
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Martin Furholt
8Department of Archaeology, Conservation and History, University of Oslo, Blindernveien 11, 0371 Oslo
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Oliver Kohlbacher
6Applied Bioinformatics, Dept. for Computer Science, University of Tübingen, Sand 14, 72076 Tübingen, Germany
9Institute for Bioinformatics and Medical Informatics, University of Tübingen, Sand 14, 72076 Tübingen, Germany
10Institute for Translational Bioinformatics, University Hospital Tübingen, Hoppe-Seyler-Str. 9, 72076 Tübingen, Germany
11Biomolecular Interactions, Max Planck Institute for Developmental Biology, Max-Planck-Ring 5, 72076 Tübingen
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  • ORCID record for Oliver Kohlbacher
Sabine Schade-Lindig
12Landesamt für Denkmalpflege hessenArchäologie, Schloss Biebrich, 65203 Wiesbaden
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Iain Mathieson
13Department of Genetics, Perelman School of Medicine, University of Pennsylvania, 415 Curie Blvd, Philadelphia, PA 19104, USA
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Andre Franke
1Institute of Clinical Molecular Biology, Kiel University, Rosalind-Franklin-Straße 12, 24105 Kiel, Germany
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Johannes Krause
5Max Planck Institute for the Science of Human History, Khalaische Strasse 10, 07745 Jena, Germany
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Johannes Müller
2Institute of Pre- and Protohistoric Archaeology, Kiel University, Johanna-Mestorf-Straße 2-6, 24118 Kiel, Germany
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Tobias L. Lenz
7Research Group for Evolutionary Immunogenomics, Max Planck Institute for Evolutionary Biology, August-Thienemann-Str. 2, 24306 Plön, Germany
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Almut Nebel
1Institute of Clinical Molecular Biology, Kiel University, Rosalind-Franklin-Straße 12, 24105 Kiel, Germany
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Ben Krause-Kyora
1Institute of Clinical Molecular Biology, Kiel University, Rosalind-Franklin-Straße 12, 24105 Kiel, Germany
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  • For correspondence: b.krause-kyora{at}ikmb.uni-kiel.de
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Abstract

The Wartberg culture (WBC, 3,500-2,800 BCE) dates to the Late Neolithic period, a time of important demographic and cultural transformations in western Europe. We perform a genome-wide analysis of 42 individuals who were interred in a WBC collective burial in Niedertiefenbach, Germany (3,300-3,200 cal. BCE). Our results highlight that the Niedertiefenbach population indeed emerged at the beginning of the WBC. This farming community was genetically heterogeneous and carried a surprisingly large hunter-gatherer ancestry component (40%). We detect considerable differences in the human leukocyte antigen gene pool between contemporary Europeans and the Niedertiefenbach individuals whose immune response was primarily geared towards defending viral infections.

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Posted November 21, 2019.
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Neolithic genomes reveal a distinct ancient HLA allele pool and population transformation in Europe
Alexander Immel, Christoph Rinne, John Meadows, Rodrigo Barquera, András Szolek, Federica Pierini, Julian Susat, Lisa Böhme, Janina Dose, Joanna Bonczarowska, Clara Drummer, Katharina Fuchs, David Ellinghaus, Jan Christian Kässens, Martin Furholt, Oliver Kohlbacher, Sabine Schade-Lindig, Iain Mathieson, Andre Franke, Johannes Krause, Johannes Müller, Tobias L. Lenz, Almut Nebel, Ben Krause-Kyora
bioRxiv 851188; doi: https://doi.org/10.1101/851188
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Neolithic genomes reveal a distinct ancient HLA allele pool and population transformation in Europe
Alexander Immel, Christoph Rinne, John Meadows, Rodrigo Barquera, András Szolek, Federica Pierini, Julian Susat, Lisa Böhme, Janina Dose, Joanna Bonczarowska, Clara Drummer, Katharina Fuchs, David Ellinghaus, Jan Christian Kässens, Martin Furholt, Oliver Kohlbacher, Sabine Schade-Lindig, Iain Mathieson, Andre Franke, Johannes Krause, Johannes Müller, Tobias L. Lenz, Almut Nebel, Ben Krause-Kyora
bioRxiv 851188; doi: https://doi.org/10.1101/851188

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