HEADER TRANSFERASE 30-APR-09 3H9F TITLE CRYSTAL STRUCTURE OF HUMAN DUAL SPECIFICITY PROTEIN KINASE (TTK) IN TITLE 2 COMPLEX WITH A PYRIMIDO-DIAZEPIN LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE TTK; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE, PYT; COMPND 5 EC: 2.7.12.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MPS1L1, TTK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TTK, HMPS1, PYT, ESK, KINASE, DUAL SPECIFICITY, PHOSPHOTYROSINE KEYWDS 2 PICKED THREONINE KINASE, SGC, STRUCTURAL GENOMICS CONSORTIUM, ATP- KEYWDS 3 BINDING, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, SERINE/THREONINE- KEYWDS 4 PROTEIN KINASE, TRANSFERASE, TYROSINE-PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,M.SOUNDARARAJAN,T.KEATES,J.M.ELKINS,O.KING, AUTHOR 2 O.FEDOROV,S.S.PICAUD,A.C.W.PIKE,W.YUE,A.CHAIKUAD,F.VON DELFT, AUTHOR 3 C.H.ARROWSMITH,A.EDWARDS,J.WEIGELT,C.BOUNTRA,N.KWIATKOWSKI,N.S.GRAY, AUTHOR 4 S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 06-NOV-24 3H9F 1 REMARK REVDAT 4 06-SEP-23 3H9F 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 HETSYN LINK REVDAT 3 13-JUL-11 3H9F 1 VERSN REVDAT 2 01-SEP-10 3H9F 1 JRNL REVDAT 1 19-MAY-09 3H9F 0 JRNL AUTH N.KWIATKOWSKI,N.JELLUMA,P.FILIPPAKOPOULOS,M.SOUNDARARAJAN, JRNL AUTH 2 M.S.MANAK,M.KWON,H.G.CHOI,T.SIM,Q.L.DEVERAUX,S.ROTTMANN, JRNL AUTH 3 D.PELLMAN,J.V.SHAH,G.J.KOPS,S.KNAPP,N.S.GRAY JRNL TITL SMALL-MOLECULE KINASE INHIBITORS PROVIDE INSIGHT INTO MPS1 JRNL TITL 2 CELL CYCLE FUNCTION. JRNL REF NAT.CHEM.BIOL. V. 6 359 2010 JRNL REFN ISSN 1552-4450 JRNL PMID 20383151 JRNL DOI 10.1038/NCHEMBIO.345 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 14199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 709 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 964 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.4560 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.4680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2084 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 80.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.51000 REMARK 3 B22 (A**2) : 2.32000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.360 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.596 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2171 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1438 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2950 ; 1.471 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3505 ; 1.359 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 260 ; 5.681 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;40.310 ;25.435 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 373 ;16.589 ;15.040 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;25.664 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 323 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2352 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 389 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1314 ; 3.752 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 523 ; 0.919 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2125 ; 6.104 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 857 ;10.141 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 825 ;12.840 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 515 A 569 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6307 24.4950 46.7227 REMARK 3 T TENSOR REMARK 3 T11: 0.1908 T22: 0.3456 REMARK 3 T33: 0.3120 T12: -0.0469 REMARK 3 T13: -0.0837 T23: -0.0931 REMARK 3 L TENSOR REMARK 3 L11: 8.6782 L22: 3.7446 REMARK 3 L33: 7.6079 L12: -1.4429 REMARK 3 L13: -2.0670 L23: -3.0503 REMARK 3 S TENSOR REMARK 3 S11: -0.1436 S12: -0.7418 S13: 0.2427 REMARK 3 S21: 0.2693 S22: 0.2649 S23: -0.6707 REMARK 3 S31: -0.1154 S32: 0.8005 S33: -0.1213 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 570 A 663 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7574 23.1638 38.8088 REMARK 3 T TENSOR REMARK 3 T11: 0.1556 T22: 0.0618 REMARK 3 T33: 0.0762 T12: 0.0502 REMARK 3 T13: 0.0318 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 6.8394 L22: 1.4697 REMARK 3 L33: 4.4524 L12: 0.3811 REMARK 3 L13: 3.1567 L23: 0.0449 REMARK 3 S TENSOR REMARK 3 S11: 0.0355 S12: -0.2991 S13: 0.2162 REMARK 3 S21: -0.0288 S22: -0.0224 S23: 0.1825 REMARK 3 S31: -0.1668 S32: -0.2150 S33: -0.0131 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 664 A 794 REMARK 3 ORIGIN FOR THE GROUP (A): -12.1441 9.2431 30.2134 REMARK 3 T TENSOR REMARK 3 T11: 0.2093 T22: 0.1626 REMARK 3 T33: 0.2864 T12: -0.0428 REMARK 3 T13: -0.0159 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 4.7058 L22: 4.0866 REMARK 3 L33: 4.7579 L12: -1.4686 REMARK 3 L13: 1.3859 L23: -0.6252 REMARK 3 S TENSOR REMARK 3 S11: 0.1899 S12: 0.2403 S13: -0.8595 REMARK 3 S21: -0.0747 S22: -0.0181 S23: 0.1092 REMARK 3 S31: 0.6569 S32: 0.0573 S33: -0.1718 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3H9F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9782 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14201 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 41.414 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.73300 REMARK 200 R SYM FOR SHELL (I) : 0.41700 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 3CEK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2M MGCL2, 0.1M BT PH REMARK 280 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.34500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.37500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.60000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.34500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.37500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.60000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.34500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.37500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.60000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.34500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.37500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 115.20000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 115.20000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 1 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 496 REMARK 465 HIS A 497 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 SER A 503 REMARK 465 SER A 504 REMARK 465 GLY A 505 REMARK 465 VAL A 506 REMARK 465 ASP A 507 REMARK 465 LEU A 508 REMARK 465 GLY A 509 REMARK 465 THR A 510 REMARK 465 GLU A 511 REMARK 465 ASN A 512 REMARK 465 LEU A 513 REMARK 465 TYR A 514 REMARK 465 VAL A 678 REMARK 465 VAL A 679 REMARK 465 LYS A 680 REMARK 465 ASP A 681 REMARK 465 SER A 682 REMARK 465 GLN A 683 REMARK 465 VAL A 684 REMARK 465 SER A 699 REMARK 465 SER A 700 REMARK 465 SER A 701 REMARK 465 ARG A 702 REMARK 465 GLU A 703 REMARK 465 ASN A 704 REMARK 465 GLY A 705 REMARK 465 LYS A 706 REMARK 465 SER A 707 REMARK 465 LYS A 708 REMARK 465 THR A 795 REMARK 465 HIS A 796 REMARK 465 PRO A 797 REMARK 465 VAL A 798 REMARK 465 ASN A 799 REMARK 465 GLN A 800 REMARK 465 MET A 801 REMARK 465 ALA A 802 REMARK 465 LYS A 803 REMARK 465 GLY A 804 REMARK 465 THR A 805 REMARK 465 THR A 806 REMARK 465 GLU A 807 REMARK 465 GLU A 808 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 515 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 516 CD OE1 NE2 REMARK 470 ARG A 523 CZ NH1 NH2 REMARK 470 SER A 536 OG REMARK 470 LYS A 546 CG CD CE NZ REMARK 470 LYS A 547 CD CE NZ REMARK 470 GLN A 563 CG CD OE1 NE2 REMARK 470 GLU A 571 CG CD OE1 OE2 REMARK 470 LYS A 577 CD CE NZ REMARK 470 GLN A 580 CD OE1 NE2 REMARK 470 LYS A 614 CE NZ REMARK 470 LYS A 615 CE NZ REMARK 470 LYS A 617 CG CD CE NZ REMARK 470 ASP A 657 CG OD1 OD2 REMARK 470 ILE A 667 CG1 CG2 CD1 REMARK 470 GLN A 670 CG CD OE1 NE2 REMARK 470 THR A 686 OG1 CG2 REMARK 470 SER A 709 OG REMARK 470 LYS A 710 CG CD CE NZ REMARK 470 ILE A 711 CD1 REMARK 470 ILE A 741 CG1 CG2 CD1 REMARK 470 GLU A 753 CD OE1 OE2 REMARK 470 ASP A 758 CG OD1 OD2 REMARK 470 LYS A 773 NZ REMARK 470 GLN A 794 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 536 52.29 -103.04 REMARK 500 LYS A 617 -71.16 -56.71 REMARK 500 SER A 646 -10.85 80.34 REMARK 500 ILE A 667 -72.46 -58.58 REMARK 500 ASP A 697 49.06 -71.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TPO A 675 O3P REMARK 620 2 SEP A 677 O1P 91.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 92M A 809 DBREF 3H9F A 519 808 UNP P33981 TTK_HUMAN 519 808 SEQADV 3H9F MET A 496 UNP P33981 EXPRESSION TAG SEQADV 3H9F HIS A 497 UNP P33981 EXPRESSION TAG SEQADV 3H9F HIS A 498 UNP P33981 EXPRESSION TAG SEQADV 3H9F HIS A 499 UNP P33981 EXPRESSION TAG SEQADV 3H9F HIS A 500 UNP P33981 EXPRESSION TAG SEQADV 3H9F HIS A 501 UNP P33981 EXPRESSION TAG SEQADV 3H9F HIS A 502 UNP P33981 EXPRESSION TAG SEQADV 3H9F SER A 503 UNP P33981 EXPRESSION TAG SEQADV 3H9F SER A 504 UNP P33981 EXPRESSION TAG SEQADV 3H9F GLY A 505 UNP P33981 EXPRESSION TAG SEQADV 3H9F VAL A 506 UNP P33981 EXPRESSION TAG SEQADV 3H9F ASP A 507 UNP P33981 EXPRESSION TAG SEQADV 3H9F LEU A 508 UNP P33981 EXPRESSION TAG SEQADV 3H9F GLY A 509 UNP P33981 EXPRESSION TAG SEQADV 3H9F THR A 510 UNP P33981 EXPRESSION TAG SEQADV 3H9F GLU A 511 UNP P33981 EXPRESSION TAG SEQADV 3H9F ASN A 512 UNP P33981 EXPRESSION TAG SEQADV 3H9F LEU A 513 UNP P33981 EXPRESSION TAG SEQADV 3H9F TYR A 514 UNP P33981 EXPRESSION TAG SEQADV 3H9F PHE A 515 UNP P33981 EXPRESSION TAG SEQADV 3H9F GLN A 516 UNP P33981 EXPRESSION TAG SEQADV 3H9F SER A 517 UNP P33981 EXPRESSION TAG SEQADV 3H9F MET A 518 UNP P33981 EXPRESSION TAG SEQRES 1 A 313 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 313 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER VAL LYS SEQRES 3 A 313 GLY ARG ILE TYR SER ILE LEU LYS GLN ILE GLY SER GLY SEQRES 4 A 313 GLY SER SER LYS VAL PHE GLN VAL LEU ASN GLU LYS LYS SEQRES 5 A 313 GLN ILE TYR ALA ILE LYS TYR VAL ASN LEU GLU GLU ALA SEQRES 6 A 313 ASP ASN GLN THR LEU ASP SER TYR ARG ASN GLU ILE ALA SEQRES 7 A 313 TYR LEU ASN LYS LEU GLN GLN HIS SER ASP LYS ILE ILE SEQRES 8 A 313 ARG LEU TYR ASP TYR GLU ILE THR ASP GLN TYR ILE TYR SEQRES 9 A 313 MET VAL MET GLU CYS GLY ASN ILE ASP LEU ASN SER TRP SEQRES 10 A 313 LEU LYS LYS LYS LYS SER ILE ASP PRO TRP GLU ARG LYS SEQRES 11 A 313 SER TYR TRP LYS ASN MET LEU GLU ALA VAL HIS THR ILE SEQRES 12 A 313 HIS GLN HIS GLY ILE VAL HIS SER ASP LEU LYS PRO ALA SEQRES 13 A 313 ASN PHE LEU ILE VAL ASP GLY MET LEU LYS LEU ILE ASP SEQRES 14 A 313 PHE GLY ILE ALA ASN GLN MET GLN PRO ASP TPO TPO SEP SEQRES 15 A 313 VAL VAL LYS ASP SER GLN VAL GLY THR VAL ASN TYR MET SEQRES 16 A 313 PRO PRO GLU ALA ILE LYS ASP MET SER SER SER ARG GLU SEQRES 17 A 313 ASN GLY LYS SER LYS SER LYS ILE SER PRO LYS SER ASP SEQRES 18 A 313 VAL TRP SER LEU GLY CYS ILE LEU TYR TYR MET THR TYR SEQRES 19 A 313 GLY LYS THR PRO PHE GLN GLN ILE ILE ASN GLN ILE SER SEQRES 20 A 313 LYS LEU HIS ALA ILE ILE ASP PRO ASN HIS GLU ILE GLU SEQRES 21 A 313 PHE PRO ASP ILE PRO GLU LYS ASP LEU GLN ASP VAL LEU SEQRES 22 A 313 LYS CYS CYS LEU LYS ARG ASP PRO LYS GLN ARG ILE SER SEQRES 23 A 313 ILE PRO GLU LEU LEU ALA HIS PRO TYR VAL GLN ILE GLN SEQRES 24 A 313 THR HIS PRO VAL ASN GLN MET ALA LYS GLY THR THR GLU SEQRES 25 A 313 GLU MODRES 3H9F TPO A 675 THR PHOSPHOTHREONINE MODRES 3H9F TPO A 676 THR PHOSPHOTHREONINE MODRES 3H9F SEP A 677 SER PHOSPHOSERINE HET TPO A 675 11 HET TPO A 676 11 HET SEP A 677 10 HET MG A 1 1 HET MG A 2 1 HET 92M A 809 34 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM MG MAGNESIUM ION HETNAM 92M 9-CYCLOPENTYL-2-(4-(4-HYDROXYPIPERIDIN-1-YL)-2- HETNAM 2 92M METHOXYPHENYLAMINO)-5-METHYL-8,9-DIHYDRO-5H- HETNAM 3 92M PYRIMIDO[4,5-B][1,4]DIAZEPIN -6(7H)-ONE HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE HETSYN 92M 9-CYCLOPENTYL-2-{[4-(4-HYDROXYPIPERIDIN-1-YL)-2- HETSYN 2 92M METHOXYPHENYL]AMINO}-5-METHYL-5,7,8,9-TETRAHYDRO-6H- HETSYN 3 92M PYRIMIDO[4,5-B][1,4 ]DIAZEPIN-6-ONE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 MG 2(MG 2+) FORMUL 4 92M C25 H34 N6 O3 FORMUL 5 HOH *11(H2 O) HELIX 1 1 ASP A 561 GLN A 580 1 20 HELIX 2 2 LEU A 609 LYS A 616 1 8 HELIX 3 3 ASP A 620 HIS A 641 1 22 HELIX 4 4 LYS A 649 ALA A 651 5 3 HELIX 5 5 PRO A 691 ASP A 697 1 7 HELIX 6 6 PRO A 713 GLY A 730 1 18 HELIX 7 7 ASN A 739 ASP A 749 1 11 HELIX 8 8 GLU A 761 LEU A 772 1 12 HELIX 9 9 ASP A 775 ARG A 779 5 5 HELIX 10 10 SER A 781 LEU A 786 1 6 HELIX 11 11 HIS A 788 ILE A 793 1 6 SHEET 1 A 6 SER A 517 VAL A 520 0 SHEET 2 A 6 ARG A 523 SER A 533 -1 O TYR A 525 N MET A 518 SHEET 3 A 6 SER A 537 LEU A 543 -1 O VAL A 539 N GLY A 532 SHEET 4 A 6 ILE A 549 ASN A 556 -1 O TYR A 554 N LYS A 538 SHEET 5 A 6 TYR A 597 MET A 602 -1 O MET A 602 N ALA A 551 SHEET 6 A 6 LEU A 588 ILE A 593 -1 N TYR A 589 O VAL A 601 SHEET 1 B 3 SER A 517 VAL A 520 0 SHEET 2 B 3 ARG A 523 SER A 533 -1 O TYR A 525 N MET A 518 SHEET 3 B 3 GLN A 672 PRO A 673 -1 O GLN A 672 N SER A 533 SHEET 1 C 3 ILE A 607 ASP A 608 0 SHEET 2 C 3 PHE A 653 VAL A 656 -1 O ILE A 655 N ILE A 607 SHEET 3 C 3 MET A 659 LEU A 662 -1 O MET A 659 N VAL A 656 LINK C ASP A 674 N TPO A 675 1555 1555 1.32 LINK C TPO A 675 N TPO A 676 1555 1555 1.33 LINK C TPO A 676 N SEP A 677 1555 1555 1.34 LINK MG MG A 1 O3P TPO A 675 1555 1555 2.28 LINK MG MG A 1 O1P SEP A 677 1555 1555 2.23 LINK MG MG A 2 O2P TPO A 675 1555 1555 1.84 CISPEP 1 GLY A 535 SER A 536 0 -0.39 SITE 1 AC1 2 TPO A 675 SEP A 677 SITE 1 AC2 3 TPO A 675 TPO A 676 92M A 809 SITE 1 AC3 15 MG A 2 ILE A 531 GLN A 541 ALA A 551 SITE 2 AC3 15 ILE A 586 MET A 602 GLU A 603 CYS A 604 SITE 3 AC3 15 GLY A 605 ASN A 606 ILE A 607 SER A 611 SITE 4 AC3 15 LEU A 654 ASP A 664 TPO A 676 CRYST1 70.690 110.750 115.200 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014146 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009029 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008681 0.00000 CONECT 1263 1269 CONECT 1269 1263 1270 CONECT 1270 1269 1271 1278 CONECT 1271 1270 1272 1273 CONECT 1272 1271 CONECT 1273 1271 1274 CONECT 1274 1273 1275 1276 1277 CONECT 1275 1274 CONECT 1276 1274 2090 CONECT 1277 1274 2089 CONECT 1278 1270 1279 1280 CONECT 1279 1278 CONECT 1280 1278 1281 CONECT 1281 1280 1282 1289 CONECT 1282 1281 1283 1284 CONECT 1283 1282 CONECT 1284 1282 1285 CONECT 1285 1284 1286 1287 1288 CONECT 1286 1285 CONECT 1287 1285 CONECT 1288 1285 CONECT 1289 1281 1290 1291 CONECT 1290 1289 CONECT 1291 1289 1292 CONECT 1292 1291 1293 1295 CONECT 1293 1292 1294 CONECT 1294 1293 1297 CONECT 1295 1292 1296 CONECT 1296 1295 CONECT 1297 1294 1298 1299 1300 CONECT 1298 1297 2089 CONECT 1299 1297 CONECT 1300 1297 CONECT 2089 1277 1298 CONECT 2090 1276 CONECT 2091 2092 2095 2119 CONECT 2092 2091 2093 2113 CONECT 2093 2092 2094 CONECT 2094 2093 2112 CONECT 2095 2091 2112 CONECT 2096 2097 2102 CONECT 2097 2096 2098 CONECT 2098 2097 2099 2100 CONECT 2099 2098 CONECT 2100 2098 2101 CONECT 2101 2100 2102 CONECT 2102 2096 2101 2103 CONECT 2103 2102 2104 2108 CONECT 2104 2103 2105 CONECT 2105 2104 2106 2110 CONECT 2106 2105 2107 CONECT 2107 2106 CONECT 2108 2103 2109 CONECT 2109 2108 2110 CONECT 2110 2105 2109 2111 CONECT 2111 2110 2112 CONECT 2112 2094 2095 2111 CONECT 2113 2092 2114 2115 CONECT 2114 2113 CONECT 2115 2113 2116 2117 CONECT 2116 2115 CONECT 2117 2115 2118 CONECT 2118 2117 2119 CONECT 2119 2091 2118 2120 CONECT 2120 2119 2121 2124 CONECT 2121 2120 2122 CONECT 2122 2121 2123 CONECT 2123 2122 2124 CONECT 2124 2120 2123 MASTER 468 0 6 11 12 0 6 6 2131 1 69 25 END