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- 3D electron microscopy data navigator -

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Browse 3DEM data

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Recently released data

Release date: (EMDB: 309, PDB: 205)ImageQ: When the data are updated?

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ImageRecent 3DEM papers

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Fragment-based drug discovery strategy reveals an unprecedented allosteric binding site in Mycobacterium tuberculosis DNA gyrase.

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Cryo-EM reveals a C15 annular stacking assembly of the VEEV nsP3 Alphavirus Unique Domain.

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Insights into Genome Ejection by a Therapeutic phiKMV-like Bacteriophage.

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Engineered TYK2 dependence enables myeloid-selective IL-10 receptor agonism.

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An opioid efficacy switch for reversible optical control of analgesia.

Show all 3DEM papers

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ImageAbout EM Navigator

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News

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:ImageEMDB header

External links:ImagewwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:ImageThe Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / ImageStructure data by Ardem Patapoutian / ImageStructure data by David Julius

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Aug 12, 2020. Covid-19 info

Covid-19 info

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URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:ImageCovid-19 info / ImageMar 5, 2020. Novel coronavirus structure data

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Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:ImageYorodumi Speices / ImageAug 12, 2020. Covid-19 info

External links:ImageCOVID-19 featured content - PDBj / ImageMolecule of the Month (242)：Coronavirus Proteases

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Jul 5, 2019. Downlodablable text data

Downlodablable text data

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Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:ImageEMN Search / ImageEMN Statistics

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EM Navigator

3D electron microscopy data browser

  • EM Navigator is a browser for 3D electron microscopy (3D-EM) data of biological molecules and assemblies.
  • It provides EMDB-PDB cross-search, statistical information, and links to similar structures.
  • You can easily check the latest EM structural data and structural papers.

Related info.:ImageEMDB / ImagePDB / ImagePDBj / ImageQ: What are the data sources of EM Navigator? / ImageEMN Search / ImageEMN Papers / ImageEMN Gallery / ImageEMN Statistics / ImageChanges in new EM Navigator and Yorodumi

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