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Frequently Requested Information

about the SLiME Hypothesis

   [Main Page]    [Summary]
Topics:
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The Evidence
Reasons for the Project
About Bacteria
The Columbia River Basalt
Future SLiME Research
Significance for Waste Cleanup
Significance for Early Life on Earth
Significance for Potential Life on Other Planets



 
 

Evidence for the SLiME Hypothesis

Our observations and experiments have led us to hypothesize that a Subsurface Lithotrophic Microbial Ecosystem (SLME) is present in within the Columbia River Basalt group, in the northwestern United States. That is, a microbial community is present in basaltic aquifers in which primary production (creation of organic carbon) is carried out using chemical energy liberated by weathering of the rocks.  We hypothesize that in this ecosystem, no connection with photosynthetic processes occuring at the Earth�s surface is required.  If true, this is the first such independent ecosystem discovered, but many more should exist.

There are several lines of evidence leading us to this idea:

- Groundwaters from the basalt formation contain 10,000 to 1,000,000 microbial cells per milliliter, yet basalt contains little or no organic carbon to sustain such a population.

- The groundwaters also contain products of anaerobic bacterial respiration, including methane, and sulfide, which suggests that the bacteria have been active in the aquifers for a long time.

- On a regional scale, as groundwaters get older, they contain more methane, and less carbon dioxide, suggesting that microorganisms are making methane from the carbon dioxide.  If fermentation of organic matter was the source of carbon and energy, carbon dioxide would increase, instead of decreasing.

- Naturally occuring carbon consists of two stable isotopes:  Carbon-12 (98.89%), and Carbon-13 (1.11%).  Different biological processes have characteristic preferences for carbon-12 over carbon-13, and change the ratio of these isotopes in biological products.  The ratio of C-12 to C-13 in the CRB can be predicted exactly (in our current data set) by using the fractionation factor of methanogenic lithoautotrophic microorganisms.

- The CRB also contains high concentrations of dissolved hydrogen gas, which is an excellent energy source for many kinds of microorganisms, including methanogens.  In the laboratory, we can demonstrate that interactions between water and basalt produce hydrogen gas.

- In the laboratory, we can grow microorganisms, using basalt as the sole source of energy and carbon dioxide as the sole source of carbon.
 
 

Reasons for the Project

The early parts of this work were part of the Department of Energy�s Subsurface Science Program (SSP).  The SSP explored the ecology of environments deep underground for over ten years.  Many scientists from National Laboratories, Universities and the private sector collaborated on SSP research.  This work included hydrogeology, subsurface microbiology, and geochemistry.  The ultimate reason for this basic research was to understand factors that may influence plumes of contaminants that have seeped into the ground at DOE sites, and their affects on human health and the environment.

The Subsurface Science Program has recently been replaced by the Natural and Accelerated Bioremediation Research Program

Our current research related to the SLME hypothesis is sponsored by NASA's Office of Space Science program in Exobiology.  The goal of NASA's Exobiology Program is to understand the origin, evolution, and distribution of life in the universe.  Research is focused on achieving this goal by tracing the pathways taken by the biogenic elements, leading from the origin of the universe through the major epochs in the evolution of living systems and their precursors.  These epochs are: 1) The cosmic evolution of the biogenic compounds ; 2) prebiotic evolution; 3) the early evolution of life; and 4) the evolution of advanced life.  The SLME research contributes to the third category by providing a potential model for primitive ecosystems on the early Earth, and potential extraterrestrial ecosystems.
 
 

About Bacteria

Bacteria are really the dominant form of life on Earth; they are present almost everywhere on the planet, but are so small that they cannot usually be seen.  A typical bacterial cell has a diameter of one micrometer (1/1,000,000 m).  They are neither plants or animals.  In fact, if all plants and animals are grouped together into one genetic �kingdom� then bacteria form two or three other only distantly-related �kingdoms.�  While animals respire oxygen and excrete carbon dioxide, various kinds of bacteria use many different chemicals for respiration.  Many of them live comfortably in the absence of oxygen.

We have NOT discovered a �new type� of microorganism in the CRB.  (Not yet, anyway.) The types of bacteria we�ve found in SLiMEs are quite familiar to microbial ecologists.  They are typically found in anaerobic environments such as aquatic and marine sediments, water-logged soils, and intestinal tracts of animals.  What is new about SLiMEs is the ecological relationship between anaerobic bacteria and igneous rocks.  In �ordinary� anaerobic sediments the bacteria grow on decaying organic matter, or on hydrogen gas that is produced by fermentation of organic matter.  In SLiMEs, bacteria grow on hydrogen that is produced from inorganic reactions between rocks and water.

The kinds of bacteria we�ve found in SLiMEs include methanogenic archaea (produce methane from hydrogen and carbon dioxide), sulfate reducing bacteria (produce hydrogen sulfide from hydrogen and sulfate), acetogenic bacteria (produce acetate (vinegar) from hydrogen and carbon dioxide), dissimilatory iron reducing bacteria (produce ferrous iron from ferric iron (rust) and hydrogen), and fermentative bacteria (live on the by-products of other bacteria).  We do not know the species names of any of these organisms as yet.  It takes a great deal of biochemical and genetic work to identify a bacterial species, and many different  ones are found in SLiMEs.

In fact, finding a new bacterial species is not very noteworthy in itself.  As near as microbiologists can figure, we only know about one-tenth of one percent of all bacterial species that are found in nature.  One can find a new bacterial species in virtually any handful of soil.  Microbial ecology is one of the frontiers of science, with much yet to be discovered.  We expect that as the CRB communities are examined more closely, new species will be described.

Good sources of information about microorganisms include the American Society for Microbiology
 

The Columbia River Basalt

Our attention was drawn to large numbers of bacteria in aquifers deep inside the Columbia River Basalt group (CRB).  The CRB is an enormous volume of volcanic rock that covers over 163,000 square kilometers in the Northwestern United States.  It consists of many layers of lava flows, known as �flood basalts,� with water confined in aquifers between the flows.  These layers can be up to 3000 meters deep.  We did not initially expect to find living organisms there, because little or no organic carbon exists in lava flows.  The Columbia River has cut dramatic gorges into the CRB, exposing many layers of basalt in deep canyon walls, and leading early geologists to name the formation after the river.  Large areas of flood basalts are also found in South America, India, and Siberia.

In SLiMEs, bacteria appear to live on chemical energy contained in basalt rocks.  This material erupted from the Earth�s mantle, which is chemically more reduced than material at the Earth�s surface.  We believe that it is this difference in reduction potential that provides potential energy that microorganisms can exploit.  We now know that under certain environmental conditions, hydrogen gas is produced in a chemical reaction between water and ferrous silicate minerals found in the basalt.

Hydrogen has been observed in gases exsolved from groundwater at a few localities around the world.  All of these occurences are associated with buried bodies of igneous rock that contain an abundance of ferrous silicates. This is consistent with our laboratory observations that ferrous silicates can react with water to produce hydrogen, under the right conditions.  These other studies did not look for microorganisms, but we think that it is likely that they were present.  The widespread distribution of igneous rocks containing ferrous silicates may indicate also a broader occurrence of SLiMEs.
 

Future SLiME Research

One might say that the data in our recent Science paper consisted of several mutually supporting lines of circumstantial evidence.  Our next task will be to obtain direct evidence for several of our key hypotheses.  For example, additional research on the environmental controls on abiotic H2 production was recently published in our ES&T paper.  We have now learned how to simulate SLiMEs in laboratory microcosms, and grow organisms on basalt.  These microcosms are currently being used to conduct manipulative experiments.  We hope to learn details of the geochemical and biochemical reactions that allow SLiMEs to exist.
 
 

Significance for Waste Cleanup

SLiMEs may be useful for bioremediation of contaminated groundwaters.  Large amounts of chemical and radioactive contaminants have seeped into the subsurface at DOE sites, as a result of forty years of nucelar weapons production.  Coincidentally, the types of organisms found in SLiMEs are exactly the kinds of organisms that can degrade some of the more common chemicals found in this waste.  Because SLiMEs appear to exist without externally supplied energy, it is conceivable that they could form self-sustaining, long-term barriers to prevent these contaminant plumes from spreading.  Additional research will be required to determine whether it is possible to establish SLiMEs where they do not already exist, and whether they can degrade the waste fast enough to be useful.

Many anaerobic microorganisms perform �reductive dehalogenation,� of chlorinated solvents, while using hydrogen as an energy source.  In this process, chlorine atoms are removed from chemicals like carbon tetrachloride and trichloroethylene.  Some microorganisms actually gain energy from reductive dechlorination, coupled to hydrogen oxidation.  Other organisms can immobilize heavy metals (such as uranium) by a similar reductive reaction, from which they gain energy.  The metals are converted from a soluble form, which travels with groundwater, to an insoluble form, which becomes trapped in the rock, thus purifying the water.
 

Significance for Early Life on Earth

The discovery of SLiMEs may have interesting implications for the evolution of Earth�s biosphere.  The standard paradigm for ecological food chains, is that all organic matter originally is produced from carbon dioxide by photosynthetic organisms, such as green plants.  (Some other microorganisms also �fix� carbon dioxide, but they either use oxygen,  which is produced by photosynthesis, or hydrogen that comes from fermentation of organic matter, so they are still ultimately dependent on photosynthesis.  Organisms at deep-sea hydrothermal vents grow this way.)  In SLiMEs, microorganisms appear to be completely independent of photosynthesis.  This is important because the first living organisms probably were not photosynthetic.  There is evidence that life existed on earth nearly 4 billion years ago.  Free oxygen only formed in the atmosphere about 2.8 billion years ago, which suggests that photosynthesis may not have been ocurring before then.  Also, photosynthetic enzymes are complex and highly evolved: they could not have been present in the first organisms.  If our interpretation is correct, SLiMEs may be a good model for how living organisms got energy before photosynthesis evolved.
 

Significance for potential Life on Other Planets

If the mechanisms that we have hypothesized to support SLiMEs are correct, then, as far as we know, it's possible that such systems could function in the subsurface of other planets in our solar system, such as Mars or Europa.

The reference to life on Mars is based on the fact that the basic components that appear to drive SLiMEs in the Columbia River Basalts are also thought to exist underground on Mars.  These include abundant basalt, liquid water, and inorganic carbon.  Conceivably, SLiMEs could live in the subsurface of Mars, if any were there.  No other living things on Earth, as far as we know, could survive on Mars today.  This may be a timely observation because the next wave of Martian exploration is now being planned.  The possibility of subsurface life on Mars was discussed by P.J. Boston, M.V. Ivanov, and C.P. McKay in Icarus (1992) 95:300-308.

A recent, highly controvorsial report by D.S. McKay, et al., suggests that one of the martian meteorites, ALH84001, contains evidence for ancient life on Mars (Science (1996) 273:924-930.)  Although this hypothesis remains highly speculative, the physical setting of the ALH84001 sample is thought, by some, to be very much like the microbial habitat in the CRB; a subsurface fracture in basalt, through which water once flowed.

Many scientists think that a layer of liquid water, or even a subsurface ocean, could exist below the surface ice layers of Europa.  Europa is thought to have a rocky core, containing ferrous minerals much like those in basalt.  If sufficient carbon is available, a SLiME like ecosystem could be conceivable in the subsurface of Europa.

Additional information can be found through the "Astrobiology Web"