The gut-to-soil axis microbiome analysis tutorial - The gut-to-soil axis microbiome analysis tutorial

Are you in the right place?

This is Gut-to-soil microbiome axis tutorial, a dataset-specific tutorial. If you’re looking to get started with QIIME 2, or for general information about the project, there are better resources.

Are you looking for:

the QIIME 2 homepage? That’s https://qiime2.org.
learning resources for microbiome marker gene (i.e., amplicon) analysis? See the QIIME 2 amplicon distribution documentation.
learning resources for microbiome metagenome analysis? See the MOSHPIT documentation.
installation instructions, plugins, books, videos, workshops, or resources? See the QIIME 2 Library.
general help? See the QIIME 2 Forum
information about the author? See https://cap-lab.bio.

Otherwise, if you’re specifically looking for Gut-to-soil microbiome axis tutorial, you’re in the right place. Read on... 📖

This site contains the gut-to-soil axis microbiome analysis tutorial. This is data-set-specific documentation. At present, it presents an amplicon analysis tutorial but over time we expect this to grow and contain tutorials and other content that cross QIIME 2 distributions.

License¶

References¶

Meilander, J., Herman, C., Manley, A., Augustine, G., Birdsell, D., Bolyen, E., Celona, K. R., Coffey, H., Cocking, J., Donoghue, T., Draves, A., Erickson, D., Foley, M., Gehret, L., Hagen, J., Hepp, C., Ingram, P., John, D., Kadar, K., … Caporaso, J. G. (2025). Upcycling human excrement: the gut microbiome to soil microbiome axis. ISME Communications, 5(1). 10.1093/ismeco/ycaf089

The gut-to-soil axis microbiome analysis tutorial

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